PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_01F74C6F3.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 90aa    MW: 10486.7 Da    PI: 9.1674
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_01F74C6F3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.31.5e-282988258
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                           dDg++WrKYGqK++ g++fpr+YYrCt++   gC ++++v+rs+ d  v+++tY+g H++
  Traes_7DS_01F74C6F3.1 29 DDGFSWRKYGQKDILGAKFPRGYYRCTYRnaqGCAATRQVQRSDADLAVFDVTYQGAHTC 88
                           8***************************98889*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-272588IPR003657WRKY domain
SuperFamilySSF1182901.06E-242688IPR003657WRKY domain
SMARTSM007744.9E-392890IPR003657WRKY domain
PROSITE profilePS5081121.7692986IPR003657WRKY domain
PfamPF031067.5E-272988IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
RFLSERKGLP RWTEKFRIPD DANLEYTPDD GFSWRKYGQK DILGAKFPRG YYRCTYRNAQ  60
GCAATRQVQR SDADLAVFDV TYQGAHTCLQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9006872e-56DQ900687.1 Hordeum vulgare clone BAC 455J22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757278.14e-51PREDICTED: probable WRKY transcription factor 2
SwissprotQ8H0Y87e-39WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLW5I4X69e-63W5I4X6_WHEAT; Uncharacterized protein
STRINGBRADI1G48770.11e-50(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-40WRKY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]